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Latimer Core Resources
This page contains an assortment of resources to help facilitate activities associated with the Latimer Core standard.
SSSOM
SKOS Mappings metadata elements based on Simple Standard for Sharing Ontological Mappings (SSSOM)
- Specification: https://mapping-commons.github.io/sssom/
- Repository: https://github.com/mapping-commons/sssom
- Citation: Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt, Charles T Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Koehler, Thomas Liener, Qinqin Long, James Malone, James A McLaughlin, Julie A McMurry, Sierra Moxon, Monica C Munoz-Torres, David Osumi-Sutherland, James A Overton, Bjoern Peters, Tim Putman, Núria Queralt-Rosinach, Kent Shefchek, Harold Solbrig, Anne Thessen, Tania Tudorache, Nicole Vasilevsky, Alex H Wagner, Christopher J Mungall, A Simple Standard for Sharing Ontological Mappings (SSSOM), Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035
Diagrams
Class Diagrams
classDiagram class ChronometricAge { hasIdentifier : array hasMeasurementOrFact : array hasReference : array chronometricAgeProtocol : string chronometricAgeRemarks : string chronometricAgeUncertaintyInYears : number earliestChronometricAge : number earliestChronometricAgeReferenceSystem : string latestChronometricAge : number latestChronometricAgeReferenceSystem : string verbatimChronometricAge : string } class EcologicalContext { biogeographicRealm : string biome : string biomeType : string bioregion : string ecoregion : string ecosystem : string habitat : string hasIdentifier : array hasMeasurementOrFact : array hasReference : array } class GeographicContext{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array region : string waterBodyType : string continent : string country : string countryCode : string county : string island : string islandGroup : string locality : string municipality : string stateProvince : string waterBody : string } class GeologicalContext{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array supergroup : string bed : string earliestAgeOrLowestStage : string earliestEonOrLowestEonothem : string earliestEpochOrLowestSeries : string earliestEraOrLowestErathem : string earliestPeriodOrLowestSystem : string formation : string group : string latestAgeOrHighestStage : string latestEonOrHighestEonothem : string latestEpochOrHighestSeries : string latestEraOrHighestErathem : string latestPeriodOrHighestSystem : string member : string } class ObjectClassification{ hasIdentifier : array hasMeasurementOrFact : array hasObjectClassification : array hasReference : array isTopParent : boolean objectClassificationLevel : string objectClassificationName : string } class ObjectGroup { alternativeCollectionName : list baseTypeOfObjectGroup : list collectionManagementSystem : list collectionName : string conditionsOfAccess : list description : string discipline : list hasChronometricAge : array hasCollectionStatusHistory : array hasEcologicalContext : array hasEvent : array hasGeographicContext : array hasGeologicalContext : array hasIdentifier : array hasMeasurementOrFact : array hasObjectClassification : array hasOrganisationalUnit : array hasPersonRole : array hasReference : array hasResourceRelationship : array hasStorageLocation : array hasTaxon : array isCurrentCollection : boolean isKnownToContainTypes : boolean material : list objectType : list period : list preparationType : list preservationMethod : list preservationMode : list typeOfObjectGroup : list degreeOfEstablishment : list } class Taxon { hasIdentifier : array hasMeasurementOrFact : array hasReference : array genus : string kingdom : string scientificName : string taxonRank : string } ObjectGroup -- ObjectClassification ObjectGroup -- ChronometricAge ObjectGroup -- EcologicalContext ObjectGroup -- GeologicalContext ObjectGroup -- ObjectClassification ObjectGroup -- GeographicContext ObjectGroup -- Taxon
classDiagram direction TB class Address{ addressType : string hasIdentifier : array addressCountry : string addressLocality : string addressRegion : string postalCode : string postOfficeBoxNumber : string streetAddress : string } class ChronometricAge{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array chronometricAgeProtocol : string chronometricAgeRemarks : string chronometricAgeUncertaintyInYears : number earliestChronometricAge : number earliestChronometricAgeReferenceSystem : string latestChronometricAge : number latestChronometricAgeReferenceSystem : string verbatimChronometricAge : string } class CollectionStatusHistory{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array hasTemporalCoverage : array status : string statusChangeReason : string statusType : string } class ContactDetail{ contactDetailCategory : string contactDetailFunction : list contactDetailValue : string hasIdentifier : array } class EcologicalContext{ biogeographicRealm : string biome : string biomeType : string bioregion : string ecoregion : string ecosystem : string habitat : string hasIdentifier : array hasMeasurementOrFact : array hasReference : array } class Event{ eventName : string hasEcologicalContext : array hasGeographicContext : array hasIdentifier : array hasMeasurementOrFact : array hasParentEvent : array hasPersonRole : array hasReference : array hasTemporalCoverage : array samplingProtocol : list verbatimEventDate : string } class GeographicContext{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array region : string waterBodyType : string continent : string country : string countryCode : string county : string island : string islandGroup : string locality : string municipality : string stateProvince : string waterBody : string } class GeologicalContext{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array supergroup : string bed : string earliestAgeOrLowestStage : string earliestEonOrLowestEonothem : string earliestEpochOrLowestSeries : string earliestEraOrLowestErathem : string earliestPeriodOrLowestSystem : string formation : string group : string latestAgeOrHighestStage : string latestEonOrHighestEonothem : string latestEpochOrHighestSeries : string latestEraOrHighestErathem : string latestPeriodOrHighestSystem : string member : string } class Identifier{ hasReference : array identifierSource : string identifierType : string identifierValue : string } class LatimerCoreScheme{ basisOfScheme : string hasIdentifier : array hasObjectGroup : array hasReference : array hasSchemeMeasurementOrFact : array hasSchemeTerm : array isDistinctObjects : boolean schemeName : string } class MeasurementOrFact{ hasIdentifier : array hasReference : array measurementDerivation : string measurementFactText : string measurementAccuracy : string measurementMethod : string measurementRemarks : string measurementType : string measurementUnit : string measurementValue : number } class ObjectClassification{ hasIdentifier : array hasMeasurementOrFact : array hasObjectClassification : array hasReference : array isTopParent : boolean objectClassificationLevel : string objectClassificationName : string } class ObjectGroup{ alternativeCollectionName : list baseTypeOfObjectGroup : list collectionManagementSystem : list collectionName : string conditionsOfAccess : list description : string discipline : list hasChronometricAge : array hasCollectionStatusHistory : array hasEcologicalContext : array hasEvent : array hasGeographicContext : array hasGeologicalContext : array hasIdentifier : array hasMeasurementOrFact : array hasObjectClassification : array hasOrganisationalUnit : array hasPersonRole : array hasReference : array hasResourceRelationship : array hasStorageLocation : array hasTaxon : array isCurrentCollection : boolean isKnownToContainTypes : boolean material : list objectType : list period : list preparationType : list preservationMethod : list preservationMode : list typeOfObjectGroup : list degreeOfEstablishment : list } class OrganisationalUnit{ hasAddress : array hasContactDetail : array hasIdentifier : array hasMeasurementOrFact : array hasParentOrganisationalUnit : array hasPersonRole : array hasReference : array organisationalUnitName : string organisationalUnitType : string } class Person{ hasAddress : array hasContactDetail : array hasIdentifier : array hasMeasurementOrFact : array hasReference : array additionalName : string familyName : string givenName : string fullName : string } class PersonRole{ hasAddress : array hasContactDetail : array hasIdentifier : array hasMeasurementOrFact : array hasPerson : array hasReference : array hasRole : array hasTemporalCoverage : array } class RecordLevel{ hasIdentifier : array hasObjectGroup : array hasPersonRole : array hasReference : array hasResourceRelationship : array isDerivedCollection : boolean license : string rights : string rightsHolder : string } class Reference{ hasIdentifier : array referenceDetails : string referenceName : string referenceType : string resourceURI : string } class ResourceRelationship{ hasIdentifier : array hasReference : array relatedResourceName : string relationshipOfResource : string relatedResourceID : string relationshipAccordingTo : list relationshipEstablishedDate : string relationshipRemarks : string resourceID : string } class Role{ hasIdentifier : array roleName : string } class SchemeMeasurementOrFact{ hasIdentifier : array hasReference : array isMandatoryMetric : boolean isRepeatableMetric : boolean schemeMeasurementType : string } class SchemeTerm{ hasIdentifier : array hasReference : array isMandatoryTerm : boolean isRepeatableTerm : boolean termName : string } class StorageLocation{ hasAddress : array hasIdentifier : array hasMeasurementOrFact : array hasParentStorageLocation : array hasReference : array locationDescription : string locationName : string locationType : string } class Taxon{ hasIdentifier : array hasMeasurementOrFact : array hasReference : array genus : string kingdom : string scientificName : string taxonRank : string } class TemporalCoverage{ hasMeasurementOrFact : array hasReference : array temporalCoverageEndDateTime : string temporalCoverageStartDateTime : string temporalCoverageType : string } Address -- Identifier ChronometricAge -- Identifier ChronometricAge -- MeasurementOrFact ChronometricAge -- Reference CollectionStatusHistory -- Identifier CollectionStatusHistory -- MeasurementOrFact CollectionStatusHistory -- Reference CollectionStatusHistory -- TemporalCoverage ContactDetail -- Identifier EcologicalContext -- Identifier EcologicalContext -- MeasurementOrFact EcologicalContext -- Reference Event -- EcologicalContext Event -- GeographicContext Event -- Identifier Event -- MeasurementOrFact Event -- Event : Parent Event -- PersonRole Event -- Reference Event -- TemporalCoverage GeographicContext -- Identifier GeographicContext -- MeasurementOrFact GeographicContext -- Reference GeologicalContext -- Identifier GeologicalContext -- MeasurementOrFact GeologicalContext -- Reference Identifier -- Reference LatimerCoreScheme -- Identifier LatimerCoreScheme -- ObjectGroup LatimerCoreScheme -- Reference LatimerCoreScheme -- SchemeMeasurementOrFact LatimerCoreScheme -- SchemeTerm MeasurementOrFact -- Identifier MeasurementOrFact -- Reference ObjectClassification -- Identifier ObjectClassification -- MeasurementOrFact ObjectClassification -- ObjectClassification ObjectClassification -- Reference ObjectGroup -- ChronometricAge ObjectGroup -- CollectionStatusHistory ObjectGroup -- EcologicalContext ObjectGroup -- Event ObjectGroup -- GeographicContext ObjectGroup -- GeologicalContext ObjectGroup -- Identifier ObjectGroup -- MeasurementOrFact ObjectGroup -- ObjectClassification ObjectGroup -- OrganisationalUnit ObjectGroup -- PersonRole ObjectGroup -- Reference ObjectGroup -- ResourceRelationship ObjectGroup -- StorageLocation ObjectGroup -- Taxon OrganisationalUnit -- Address OrganisationalUnit -- ContactDetail OrganisationalUnit -- Identifier OrganisationalUnit -- MeasurementOrFact OrganisationalUnit -- OrganisationalUnit : Parent-Child OrganisationalUnit -- PersonRole OrganisationalUnit -- Reference Person -- Address Person -- ContactDetail Person -- Identifier Person -- MeasurementOrFact Person -- Reference PersonRole -- Address PersonRole -- ContactDetail PersonRole -- Identifier PersonRole -- MeasurementOrFact PersonRole -- Person PersonRole -- Reference PersonRole -- Role PersonRole -- TemporalCoverage RecordLevel -- Identifier RecordLevel -- ObjectGroup RecordLevel -- PersonRole RecordLevel -- Reference RecordLevel -- ResourceRelationship Reference -- Identifier ResourceRelationship -- Identifier ResourceRelationship -- Reference Role -- Identifier SchemeMeasurementOrFact -- Identifier SchemeMeasurementOrFact -- Reference SchemeTerm -- Identifier SchemeTerm -- Reference StorageLocation -- Address StorageLocation -- Identifier StorageLocation -- MeasurementOrFact StorageLocation -- StorageLocation : Parent StorageLocation -- Reference Taxon -- Identifier Taxon -- MeasurementOrFact Taxon -- Reference TemporalCoverage -- MeasurementOrFact TemporalCoverage -- Reference
Entity-Relationship Diagrams
erDiagram ObjectGroup ||--o{ ResourceRelationship : Has Identifier ||--o{ Reference : Has Reference ||--o{ Identifier : Has MeasurementOrFact ||--o{ Identifier : Has MeasurementOrFact ||--o{ Reference : Has LatimerCoreScheme ||--o{ Identifier : Has LatimerCoreScheme ||--o{ ObjectGroup : Has LatimerCoreScheme ||--o{ Reference : Has LatimerCoreScheme ||--o{ SchemeMeasurementOrFact : Has LatimerCoreScheme ||--o{ SchemeTerm : Has RecordLevel ||--o{ Identifier : Has RecordLevel ||--o{ ObjectGroup : Has RecordLevel ||--o{ Reference : Has RecordLevel ||--o{ ResourceRelationship : Has ResourceRelationship ||--o{ Identifier : Has ResourceRelationship ||--o{ Reference : Has
erDiagram ObjectClassification ||--o{ ObjectClassification : Has ObjectGroup ||--o{ ChronometricAge : Has ObjectGroup ||--o{ EcologicalContext : Has ObjectGroup ||--o{ GeographicContext : Has ObjectGroup ||--o{ GeologicalContext : Has ObjectGroup ||--o{ MeasurementOrFact : Has ObjectGroup ||--o{ ObjectClassification : Has ObjectGroup ||--o{ Taxon : Has
erDiagram ObjectGroup ||--o{ OrganisationalUnit : Has ObjectGroup ||--o{ PersonRole : Has OrganisationalUnit ||--o{ Address : Has OrganisationalUnit ||--o{ ContactDetail : Has OrganisationalUnit ||--o{ ParentOrganisationalUnit : Has OrganisationalUnit ||--o{ PersonRole : Has Person ||--o{ Address : Has Person ||--o{ ContactDetail : Has PersonRole ||--o{ Address : Has PersonRole ||--o{ ContactDetail : Has PersonRole ||--o{ Person : Has PersonRole ||--o{ Role : Has PersonRole ||--o{ TemporalCoverage : Has
erDiagram CollectionStatusHistory ||--o{ TemporalCoverage : Has Event ||--o{ ParentEvent : Has Event ||--o{ TemporalCoverage : Has ObjectGroup ||--o{ CollectionStatusHistory : Has ObjectGroup ||--o{ Event : Has ObjectGroup ||--o{ StorageLocation : Has StorageLocation ||--o{ Address : Has StorageLocation ||--o{ ParentStorageLocation : Has
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