Resources

Latimer Core Resources

This page contains an assortment of resources to help facilitate activities associated with the Latimer Core standard.

SSSOM

SKOS Mappings metadata elements based on Simple Standard for Sharing Ontological Mappings (SSSOM)

  • Specification: https://mapping-commons.github.io/sssom/
  • Repository: https://github.com/mapping-commons/sssom
  • Citation: Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt, Charles T Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Koehler, Thomas Liener, Qinqin Long, James Malone, James A McLaughlin, Julie A McMurry, Sierra Moxon, Monica C Munoz-Torres, David Osumi-Sutherland, James A Overton, Bjoern Peters, Tim Putman, Núria Queralt-Rosinach, Kent Shefchek, Harold Solbrig, Anne Thessen, Tania Tudorache, Nicole Vasilevsky, Alex H Wagner, Christopher J Mungall, A Simple Standard for Sharing Ontological Mappings (SSSOM), Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035

Diagrams

Class Diagrams

classDiagram
	class ChronometricAge {
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		chronometricAgeProtocol : string
		chronometricAgeRemarks : string
		chronometricAgeUncertaintyInYears : number
		earliestChronometricAge : number
		earliestChronometricAgeReferenceSystem : string
		latestChronometricAge : number
		latestChronometricAgeReferenceSystem : string
		verbatimChronometricAge : string
	}
	class EcologicalContext {
		biogeographicRealm : string
		biome : string
		biomeType : string
		bioregion : string
		ecoregion : string
		ecosystem : string
		habitat : string
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
	}
	class GeographicContext{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		region : string
		waterBodyType : string
		continent : string
		country : string
		countryCode : string
		county : string
		island : string
		islandGroup : string
		locality : string
		municipality : string
		stateProvince : string
		waterBody : string
	}
	class GeologicalContext{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		supergroup : string
		bed : string
		earliestAgeOrLowestStage : string
		earliestEonOrLowestEonothem : string
		earliestEpochOrLowestSeries : string
		earliestEraOrLowestErathem : string
		earliestPeriodOrLowestSystem : string
		formation : string
		group : string
		latestAgeOrHighestStage : string
		latestEonOrHighestEonothem : string
		latestEpochOrHighestSeries : string
		latestEraOrHighestErathem : string
		latestPeriodOrHighestSystem : string
		member : string
	}
	class ObjectClassification{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasObjectClassification : array
		hasReference : array
		isTopParent : boolean
		objectClassificationLevel : string
		objectClassificationName : string
	}
	class ObjectGroup {
		alternativeCollectionName : list
		baseTypeOfObjectGroup : list
		collectionManagementSystem : list
		collectionName : string
		conditionsOfAccess : list
		description : string
		discipline : list
		hasChronometricAge : array
		hasCollectionStatusHistory : array
		hasEcologicalContext : array
		hasEvent : array
		hasGeographicContext : array
		hasGeologicalContext : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasObjectClassification : array
		hasOrganisationalUnit : array
		hasPersonRole : array
        hasReference : array
        hasResourceRelationship : array
        hasStorageLocation : array
        hasTaxon : array
        isCurrentCollection : boolean
        isKnownToContainTypes : boolean
        material : list
        objectType : list
        period : list
        preparationType : list
        preservationMethod : list
        preservationMode : list
        typeOfObjectGroup : list
        degreeOfEstablishment : list
    }
	class Taxon {
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		genus : string
		kingdom : string
		scientificName : string
		taxonRank : string
	}
	ObjectGroup -- ObjectClassification
	ObjectGroup -- ChronometricAge
	ObjectGroup -- EcologicalContext
	ObjectGroup -- GeologicalContext
	ObjectGroup -- ObjectClassification
	ObjectGroup -- GeographicContext
	ObjectGroup -- Taxon
classDiagram
direction TB
	class Address{
		addressType : string
		hasIdentifier : array
		addressCountry : string
		addressLocality : string
		addressRegion : string
		postalCode : string
		postOfficeBoxNumber : string
		streetAddress : string
	}
	class ChronometricAge{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		chronometricAgeProtocol : string
		chronometricAgeRemarks : string
		chronometricAgeUncertaintyInYears : number
		earliestChronometricAge : number
		earliestChronometricAgeReferenceSystem : string
		latestChronometricAge : number
		latestChronometricAgeReferenceSystem : string
		verbatimChronometricAge : string
	}
	class CollectionStatusHistory{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		hasTemporalCoverage : array
		status : string
		statusChangeReason : string
		statusType : string
	}
	class ContactDetail{
		contactDetailCategory : string
		contactDetailFunction : list
		contactDetailValue : string
		hasIdentifier : array
	}
	class EcologicalContext{
		biogeographicRealm : string
		biome : string
		biomeType : string
		bioregion : string
		ecoregion : string
		ecosystem : string
		habitat : string
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
	}
	class Event{
		eventName : string
		hasEcologicalContext : array
		hasGeographicContext : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasParentEvent : array
		hasPersonRole : array
		hasReference : array
		hasTemporalCoverage : array
		samplingProtocol : list
		verbatimEventDate : string
	}
	class GeographicContext{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		region : string
		waterBodyType : string
		continent : string
		country : string
		countryCode : string
		county : string
		island : string
		islandGroup : string
		locality : string
		municipality : string
		stateProvince : string
		waterBody : string
	}
	class GeologicalContext{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		supergroup : string
		bed : string
		earliestAgeOrLowestStage : string
		earliestEonOrLowestEonothem : string
		earliestEpochOrLowestSeries : string
		earliestEraOrLowestErathem : string
		earliestPeriodOrLowestSystem : string
		formation : string
		group : string
		latestAgeOrHighestStage : string
		latestEonOrHighestEonothem : string
		latestEpochOrHighestSeries : string
		latestEraOrHighestErathem : string
		latestPeriodOrHighestSystem : string
		member : string
	}
	class Identifier{
		hasReference : array
		identifierSource : string
		identifierType : string
		identifierValue : string
	}
	class LatimerCoreScheme{
		basisOfScheme : string
		hasIdentifier : array
		hasObjectGroup : array
		hasReference : array
		hasSchemeMeasurementOrFact : array
		hasSchemeTerm : array
		isDistinctObjects : boolean
		schemeName : string
	}
	class MeasurementOrFact{
		hasIdentifier : array
		hasReference : array
		measurementDerivation : string
		measurementFactText : string
		measurementAccuracy : string
		measurementMethod : string
		measurementRemarks : string
		measurementType : string
		measurementUnit : string
		measurementValue : number
	}
	class ObjectClassification{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasObjectClassification : array
		hasReference : array
		isTopParent : boolean
		objectClassificationLevel : string
		objectClassificationName : string
	}
	class ObjectGroup{
		alternativeCollectionName : list
		baseTypeOfObjectGroup : list
		collectionManagementSystem : list
		collectionName : string
		conditionsOfAccess : list
		description : string
		discipline : list
		hasChronometricAge : array
		hasCollectionStatusHistory : array
		hasEcologicalContext : array
		hasEvent : array
		hasGeographicContext : array
		hasGeologicalContext : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasObjectClassification : array
		hasOrganisationalUnit : array
		hasPersonRole : array
        hasReference : array
        hasResourceRelationship : array
        hasStorageLocation : array
        hasTaxon : array
        isCurrentCollection : boolean
        isKnownToContainTypes : boolean
        material : list
        objectType : list
        period : list
        preparationType : list
        preservationMethod : list
        preservationMode : list
        typeOfObjectGroup : list
        degreeOfEstablishment : list
    }
    class OrganisationalUnit{
		hasAddress : array
		hasContactDetail : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasParentOrganisationalUnit : array
		hasPersonRole : array
		hasReference : array
		organisationalUnitName : string
		organisationalUnitType : string
	}
	class Person{
		hasAddress : array
		hasContactDetail : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		additionalName : string
		familyName : string
		givenName : string
		fullName : string
	}
	class PersonRole{
		hasAddress : array
		hasContactDetail : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasPerson : array
		hasReference : array
		hasRole : array
		hasTemporalCoverage : array
	}
	class RecordLevel{
		hasIdentifier : array
		hasObjectGroup : array
		hasPersonRole : array
		hasReference : array
		hasResourceRelationship : array
		isDerivedCollection : boolean
		license : string
		rights : string
		rightsHolder : string
	}
	class Reference{
		hasIdentifier : array
		referenceDetails : string
		referenceName : string
		referenceType : string
		resourceURI : string
	}
	class ResourceRelationship{
		hasIdentifier : array
		hasReference : array
		relatedResourceName : string
		relationshipOfResource : string
		relatedResourceID : string
		relationshipAccordingTo : list
		relationshipEstablishedDate : string
		relationshipRemarks : string
		resourceID : string
	}
	class Role{
		hasIdentifier : array
		roleName : string
	}
	class SchemeMeasurementOrFact{
		hasIdentifier : array
		hasReference : array
		isMandatoryMetric : boolean
		isRepeatableMetric : boolean
		schemeMeasurementType : string
	}
	class SchemeTerm{
		hasIdentifier : array
		hasReference : array
		isMandatoryTerm : boolean
		isRepeatableTerm : boolean
		termName : string
	}
	class StorageLocation{
		hasAddress : array
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasParentStorageLocation : array
		hasReference : array
		locationDescription : string
		locationName : string
		locationType : string
	}
	class Taxon{
		hasIdentifier : array
		hasMeasurementOrFact : array
		hasReference : array
		genus : string
		kingdom : string
		scientificName : string
		taxonRank : string
	}
	class TemporalCoverage{
		hasMeasurementOrFact : array
		hasReference : array
		temporalCoverageEndDateTime : string
		temporalCoverageStartDateTime : string
		temporalCoverageType : string
	}
	Address -- Identifier
	ChronometricAge -- Identifier
	ChronometricAge -- MeasurementOrFact
	ChronometricAge -- Reference
	CollectionStatusHistory -- Identifier
	CollectionStatusHistory -- MeasurementOrFact
	CollectionStatusHistory -- Reference
	CollectionStatusHistory -- TemporalCoverage
	ContactDetail -- Identifier
	EcologicalContext -- Identifier
	EcologicalContext -- MeasurementOrFact
	EcologicalContext -- Reference
	Event -- EcologicalContext
	Event -- GeographicContext
	Event -- Identifier
	Event -- MeasurementOrFact
	Event -- Event : Parent
	Event -- PersonRole
	Event -- Reference
	Event -- TemporalCoverage
	GeographicContext -- Identifier
	GeographicContext -- MeasurementOrFact
	GeographicContext -- Reference
	GeologicalContext -- Identifier
	GeologicalContext -- MeasurementOrFact
	GeologicalContext -- Reference
	Identifier -- Reference
	LatimerCoreScheme -- Identifier
	LatimerCoreScheme -- ObjectGroup
	LatimerCoreScheme -- Reference
	LatimerCoreScheme -- SchemeMeasurementOrFact
	LatimerCoreScheme -- SchemeTerm
	MeasurementOrFact -- Identifier
	MeasurementOrFact -- Reference
	ObjectClassification -- Identifier
	ObjectClassification -- MeasurementOrFact
	ObjectClassification -- ObjectClassification
	ObjectClassification -- Reference
	ObjectGroup -- ChronometricAge
	ObjectGroup -- CollectionStatusHistory
	ObjectGroup -- EcologicalContext
	ObjectGroup -- Event
	ObjectGroup -- GeographicContext
	ObjectGroup -- GeologicalContext
	ObjectGroup -- Identifier
	ObjectGroup -- MeasurementOrFact
	ObjectGroup -- ObjectClassification
	ObjectGroup -- OrganisationalUnit
	ObjectGroup -- PersonRole
	ObjectGroup -- Reference
	ObjectGroup -- ResourceRelationship
	ObjectGroup -- StorageLocation
	ObjectGroup -- Taxon
	OrganisationalUnit -- Address
	OrganisationalUnit -- ContactDetail
	OrganisationalUnit -- Identifier
	OrganisationalUnit -- MeasurementOrFact
	OrganisationalUnit -- OrganisationalUnit : Parent-Child
	OrganisationalUnit -- PersonRole
	OrganisationalUnit -- Reference
	Person -- Address
	Person -- ContactDetail
	Person -- Identifier
	Person -- MeasurementOrFact
	Person -- Reference
	PersonRole -- Address
	PersonRole -- ContactDetail
	PersonRole -- Identifier
	PersonRole -- MeasurementOrFact
	PersonRole -- Person
	PersonRole -- Reference
	PersonRole -- Role
	PersonRole -- TemporalCoverage
	RecordLevel -- Identifier
	RecordLevel -- ObjectGroup
	RecordLevel -- PersonRole
	RecordLevel -- Reference
	RecordLevel -- ResourceRelationship
	Reference -- Identifier
	ResourceRelationship -- Identifier
	ResourceRelationship -- Reference
	Role -- Identifier
	SchemeMeasurementOrFact -- Identifier
	SchemeMeasurementOrFact -- Reference
	SchemeTerm -- Identifier
	SchemeTerm -- Reference
	StorageLocation -- Address
	StorageLocation -- Identifier
	StorageLocation -- MeasurementOrFact
	StorageLocation -- StorageLocation : Parent
	StorageLocation -- Reference
	Taxon -- Identifier
	Taxon -- MeasurementOrFact
	Taxon -- Reference
	TemporalCoverage -- MeasurementOrFact
	TemporalCoverage -- Reference

Entity-Relationship Diagrams


erDiagram
	 ObjectGroup ||--o{ ResourceRelationship : Has
	 Identifier ||--o{ Reference : Has
	 Reference ||--o{ Identifier : Has
	 MeasurementOrFact ||--o{ Identifier : Has
	 MeasurementOrFact ||--o{ Reference : Has
	 LatimerCoreScheme ||--o{ Identifier : Has
	 LatimerCoreScheme ||--o{ ObjectGroup : Has
	 LatimerCoreScheme ||--o{ Reference : Has
	 LatimerCoreScheme ||--o{ SchemeMeasurementOrFact : Has
	 LatimerCoreScheme ||--o{ SchemeTerm : Has
	 RecordLevel ||--o{ Identifier : Has
	 RecordLevel ||--o{ ObjectGroup : Has
	 RecordLevel ||--o{ Reference : Has
	 RecordLevel ||--o{ ResourceRelationship : Has
	 ResourceRelationship ||--o{ Identifier : Has
	 ResourceRelationship ||--o{ Reference : Has
erDiagram
	 ObjectClassification ||--o{ ObjectClassification : Has
 	 ObjectGroup ||--o{ ChronometricAge : Has
	 ObjectGroup ||--o{ EcologicalContext : Has
	 ObjectGroup ||--o{ GeographicContext : Has
	 ObjectGroup ||--o{ GeologicalContext : Has
	 ObjectGroup ||--o{ MeasurementOrFact : Has
	 ObjectGroup ||--o{ ObjectClassification : Has
	 ObjectGroup ||--o{ Taxon : Has
erDiagram
	 ObjectGroup ||--o{ OrganisationalUnit : Has
	 ObjectGroup ||--o{ PersonRole : Has
	 OrganisationalUnit ||--o{ Address : Has
	 OrganisationalUnit ||--o{ ContactDetail : Has
	 OrganisationalUnit ||--o{ ParentOrganisationalUnit : Has
	 OrganisationalUnit ||--o{ PersonRole : Has
	 Person ||--o{ Address : Has
	 Person ||--o{ ContactDetail : Has
	 PersonRole ||--o{ Address : Has
	 PersonRole ||--o{ ContactDetail : Has
	 PersonRole ||--o{ Person : Has
	 PersonRole ||--o{ Role : Has
	 PersonRole ||--o{ TemporalCoverage : Has
	
erDiagram 
	 CollectionStatusHistory ||--o{ TemporalCoverage : Has
	 Event ||--o{ ParentEvent : Has
	 Event ||--o{ TemporalCoverage : Has
	 ObjectGroup ||--o{ CollectionStatusHistory : Has
	 ObjectGroup ||--o{ Event : Has
	 ObjectGroup ||--o{ StorageLocation : Has
	 StorageLocation ||--o{ Address : Has
	 StorageLocation ||--o{ ParentStorageLocation : Has
	

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